Genome-Wide analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis).
Identifieur interne : 001371 ( Main/Exploration ); précédent : 001370; suivant : 001372Genome-Wide analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis).
Auteurs : Huanlong Liu [République populaire de Chine] ; Min Wu [République populaire de Chine] ; Dongyue Zhu [République populaire de Chine] ; Feng Pan [République populaire de Chine] ; Yujiao Wang [République populaire de Chine] ; Yue Wang [République populaire de Chine] ; Yan Xiang [République populaire de Chine]Source :
- BMC plant biology [ 1471-2229 ] ; 2017.
Descripteurs français
- KwdFr :
- Génome végétal (génétique), Oryza (génétique), Phylogenèse (MeSH), Poaceae (enzymologie), Poaceae (génétique), Protéines végétales (génétique), RT-PCR (MeSH), Régulation de l'expression des gènes végétaux (génétique), Systèmes de transport d'acides aminés (génétique), Zea mays (génétique), Étude d'association pangénomique (MeSH).
- MESH :
English descriptors
- KwdEn :
- Amino Acid Transport Systems (genetics), Gene Expression Regulation, Plant (genetics), Genome, Plant (genetics), Genome-Wide Association Study (MeSH), Oryza (genetics), Phylogeny (MeSH), Plant Proteins (genetics), Poaceae (enzymology), Poaceae (genetics), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Zea mays (genetics).
- MESH :
- chemical , genetics : Amino Acid Transport Systems, Plant Proteins.
- enzymology : Poaceae.
- genetics : Gene Expression Regulation, Plant, Genome, Plant, Oryza, Poaceae, Zea mays.
- Genome-Wide Association Study, Phylogeny, Reverse Transcriptase Polymerase Chain Reaction.
Abstract
BACKGROUND
Members of the amino acid/auxin permease (AAAP) gene family play indispensable roles in various plant metabolism and biosynthesis processes. Comprehensive analysis of AAAP genes has been conducted in Arabidopsis, rice, maize and poplar, but has not been reported from moso bamboo. Phylogenetics, evolutionary patterns and further expression profiles analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis) will increase our understanding of this important gene family.
RESULTS
In this current study, we conducted phylogenetic, gene structure, promoter region, divergence time, expression patterns and qRT-PCR analysis of the 55 predicted AAAP genes in moso bamboo based on the availability of the moso bamboo genome sequence. We identified 55 putative AAAP (PeAAAP1-55) genes, which were divided into eight distinct subfamilies based on comparative phylogenetic analysis using 184 full-length protein sequences, including 55 sequences from moso bamboo, 58 sequences from rice and 71 sequences from maize. Analysis of evolutionary patterns and divergence showed that the PeAAAP genes have undergone a extensive duplication event approximately 12 million years ago (MYA) and that the split between AAAP family genes in moso bamboo and rice occurred approximately 27 MYA. The microarray analysis suggested that some genes play considerable roles in moso bamboo growth and development. We investigated the expression levels of the 16 AAP subfamily genes under abiotic stress (drought, salt and cold) by qRT-PCR to explore the potential contributions to stress response of individual PeAAAP genes in moso bamboo.
CONCLUSIONS
The results of this study suggest that PeAAAP genes play crucial roles in moso bamboo growth and development, especially in response to abiotic stress conditions. Our comprehensive, systematic study of the AAAPs gene family in moso bamboo will facilitate further analysis of the functions and evolution of AAAP genes in plants.
DOI: 10.1186/s12870-017-0980-z
PubMed: 28143411
PubMed Central: PMC5282885
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genome-Wide analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis).</title><author><name sortKey="Liu, Huanlong" sort="Liu, Huanlong" uniqKey="Liu H" first="Huanlong" last="Liu">Huanlong Liu</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>National Engineering Laboratory of Crop Stress Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Engineering Laboratory of Crop Stress Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Min" sort="Wu, Min" uniqKey="Wu M" first="Min" last="Wu">Min Wu</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Biology of Anhui Province, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Biology of Anhui Province, School of Life Sciences, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author><author><name sortKey="Zhu, Dongyue" sort="Zhu, Dongyue" uniqKey="Zhu D" first="Dongyue" last="Zhu">Dongyue Zhu</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author><author><name sortKey="Pan, Feng" sort="Pan, Feng" uniqKey="Pan F" first="Feng" last="Pan">Feng Pan</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Yujiao" sort="Wang, Yujiao" uniqKey="Wang Y" first="Yujiao" last="Wang">Yujiao Wang</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Yue" sort="Wang, Yue" uniqKey="Wang Y" first="Yue" last="Wang">Yue Wang</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author><author><name sortKey="Xiang, Yan" sort="Xiang, Yan" uniqKey="Xiang Y" first="Yan" last="Xiang">Yan Xiang</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China. xiangyanahau@sina.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Biology of Anhui Province, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. xiangyanahau@sina.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Biology of Anhui Province, School of Life Sciences, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>National Engineering Laboratory of Crop Stress Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. xiangyanahau@sina.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Engineering Laboratory of Crop Stress Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:28143411</idno><idno type="pmid">28143411</idno><idno type="doi">10.1186/s12870-017-0980-z</idno><idno type="pmc">PMC5282885</idno><idno type="wicri:Area/Main/Corpus">001458</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">001458</idno><idno type="wicri:Area/Main/Curation">001458</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">001458</idno><idno type="wicri:Area/Main/Exploration">001458</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genome-Wide analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis).</title><author><name sortKey="Liu, Huanlong" sort="Liu, Huanlong" uniqKey="Liu H" first="Huanlong" last="Liu">Huanlong Liu</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>National Engineering Laboratory of Crop Stress Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Engineering Laboratory of Crop Stress Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Min" sort="Wu, Min" uniqKey="Wu M" first="Min" last="Wu">Min Wu</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Biology of Anhui Province, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Biology of Anhui Province, School of Life Sciences, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author><author><name sortKey="Zhu, Dongyue" sort="Zhu, Dongyue" uniqKey="Zhu D" first="Dongyue" last="Zhu">Dongyue Zhu</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author><author><name sortKey="Pan, Feng" sort="Pan, Feng" uniqKey="Pan F" first="Feng" last="Pan">Feng Pan</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Yujiao" sort="Wang, Yujiao" uniqKey="Wang Y" first="Yujiao" last="Wang">Yujiao Wang</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Yue" sort="Wang, Yue" uniqKey="Wang Y" first="Yue" last="Wang">Yue Wang</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author><author><name sortKey="Xiang, Yan" sort="Xiang, Yan" uniqKey="Xiang Y" first="Yan" last="Xiang">Yan Xiang</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China. xiangyanahau@sina.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Crop Biology of Anhui Province, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. xiangyanahau@sina.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>Key Laboratory of Crop Biology of Anhui Province, School of Life Sciences, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>National Engineering Laboratory of Crop Stress Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. xiangyanahau@sina.com.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>National Engineering Laboratory of Crop Stress Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036</wicri:regionArea><wicri:noRegion>230036</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC plant biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Transport Systems (genetics)</term><term>Gene Expression Regulation, Plant (genetics)</term><term>Genome, Plant (genetics)</term><term>Genome-Wide Association Study (MeSH)</term><term>Oryza (genetics)</term><term>Phylogeny (MeSH)</term><term>Plant Proteins (genetics)</term><term>Poaceae (enzymology)</term><term>Poaceae (genetics)</term><term>Reverse Transcriptase Polymerase Chain Reaction (MeSH)</term><term>Zea mays (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Génome végétal (génétique)</term><term>Oryza (génétique)</term><term>Phylogenèse (MeSH)</term><term>Poaceae (enzymologie)</term><term>Poaceae (génétique)</term><term>Protéines végétales (génétique)</term><term>RT-PCR (MeSH)</term><term>Régulation de l'expression des gènes végétaux (génétique)</term><term>Systèmes de transport d'acides aminés (génétique)</term><term>Zea mays (génétique)</term><term>Étude d'association pangénomique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Amino Acid Transport Systems</term><term>Plant Proteins</term></keywords><keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Poaceae</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Poaceae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Gene Expression Regulation, Plant</term><term>Genome, Plant</term><term>Oryza</term><term>Poaceae</term><term>Zea mays</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Génome végétal</term><term>Oryza</term><term>Poaceae</term><term>Protéines végétales</term><term>Régulation de l'expression des gènes végétaux</term><term>Systèmes de transport d'acides aminés</term><term>Zea mays</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genome-Wide Association Study</term><term>Phylogeny</term><term>Reverse Transcriptase Polymerase Chain Reaction</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Phylogenèse</term><term>RT-PCR</term><term>Étude d'association pangénomique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Members of the amino acid/auxin permease (AAAP) gene family play indispensable roles in various plant metabolism and biosynthesis processes. Comprehensive analysis of AAAP genes has been conducted in Arabidopsis, rice, maize and poplar, but has not been reported from moso bamboo. Phylogenetics, evolutionary patterns and further expression profiles analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis) will increase our understanding of this important gene family.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>In this current study, we conducted phylogenetic, gene structure, promoter region, divergence time, expression patterns and qRT-PCR analysis of the 55 predicted AAAP genes in moso bamboo based on the availability of the moso bamboo genome sequence. We identified 55 putative AAAP (PeAAAP1-55) genes, which were divided into eight distinct subfamilies based on comparative phylogenetic analysis using 184 full-length protein sequences, including 55 sequences from moso bamboo, 58 sequences from rice and 71 sequences from maize. Analysis of evolutionary patterns and divergence showed that the PeAAAP genes have undergone a extensive duplication event approximately 12 million years ago (MYA) and that the split between AAAP family genes in moso bamboo and rice occurred approximately 27 MYA. The microarray analysis suggested that some genes play considerable roles in moso bamboo growth and development. We investigated the expression levels of the 16 AAP subfamily genes under abiotic stress (drought, salt and cold) by qRT-PCR to explore the potential contributions to stress response of individual PeAAAP genes in moso bamboo.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>The results of this study suggest that PeAAAP genes play crucial roles in moso bamboo growth and development, especially in response to abiotic stress conditions. Our comprehensive, systematic study of the AAAPs gene family in moso bamboo will facilitate further analysis of the functions and evolution of AAAP genes in plants.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28143411</PMID><DateCompleted><Year>2017</Year><Month>09</Month><Day>27</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1471-2229</ISSN><JournalIssue CitedMedium="Internet"><Volume>17</Volume><Issue>1</Issue><PubDate><Year>2017</Year><Month>01</Month><Day>31</Day></PubDate></JournalIssue><Title>BMC plant biology</Title><ISOAbbreviation>BMC Plant Biol</ISOAbbreviation></Journal><ArticleTitle>Genome-Wide analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis).</ArticleTitle><Pagination><MedlinePgn>29</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12870-017-0980-z</ELocationID><Abstract><AbstractText Label="BACKGROUND">Members of the amino acid/auxin permease (AAAP) gene family play indispensable roles in various plant metabolism and biosynthesis processes. Comprehensive analysis of AAAP genes has been conducted in Arabidopsis, rice, maize and poplar, but has not been reported from moso bamboo. Phylogenetics, evolutionary patterns and further expression profiles analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis) will increase our understanding of this important gene family.</AbstractText><AbstractText Label="RESULTS">In this current study, we conducted phylogenetic, gene structure, promoter region, divergence time, expression patterns and qRT-PCR analysis of the 55 predicted AAAP genes in moso bamboo based on the availability of the moso bamboo genome sequence. We identified 55 putative AAAP (PeAAAP1-55) genes, which were divided into eight distinct subfamilies based on comparative phylogenetic analysis using 184 full-length protein sequences, including 55 sequences from moso bamboo, 58 sequences from rice and 71 sequences from maize. Analysis of evolutionary patterns and divergence showed that the PeAAAP genes have undergone a extensive duplication event approximately 12 million years ago (MYA) and that the split between AAAP family genes in moso bamboo and rice occurred approximately 27 MYA. The microarray analysis suggested that some genes play considerable roles in moso bamboo growth and development. We investigated the expression levels of the 16 AAP subfamily genes under abiotic stress (drought, salt and cold) by qRT-PCR to explore the potential contributions to stress response of individual PeAAAP genes in moso bamboo.</AbstractText><AbstractText Label="CONCLUSIONS">The results of this study suggest that PeAAAP genes play crucial roles in moso bamboo growth and development, especially in response to abiotic stress conditions. Our comprehensive, systematic study of the AAAPs gene family in moso bamboo will facilitate further analysis of the functions and evolution of AAAP genes in plants.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Huanlong</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>National Engineering Laboratory of Crop Stress Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wu</LastName><ForeName>Min</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Crop Biology of Anhui Province, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhu</LastName><ForeName>Dongyue</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pan</LastName><ForeName>Feng</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Yujiao</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wang</LastName><ForeName>Yue</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xiang</LastName><ForeName>Yan</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Laboratory of Modern Biotechnology, School of Forestry and Landscape Architecture, Anhui Agricultural University, Hefei, 230036, China. xiangyanahau@sina.com.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Key Laboratory of Crop Biology of Anhui Province, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. xiangyanahau@sina.com.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>National Engineering Laboratory of Crop Stress Resistance Breeding, School of Life Sciences, Anhui Agricultural University, Hefei, 230036, China. xiangyanahau@sina.com.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>01</Month><Day>31</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>BMC Plant Biol</MedlineTA><NlmUniqueID>100967807</NlmUniqueID><ISSNLinking>1471-2229</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D026905">Amino Acid Transport Systems</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D026905" MajorTopicYN="N">Amino Acid Transport Systems</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D055106" MajorTopicYN="N">Genome-Wide Association Study</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012275" MajorTopicYN="N">Oryza</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006109" MajorTopicYN="N">Poaceae</DescriptorName><QualifierName UI="Q000201" MajorTopicYN="Y">enzymology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D003313" MajorTopicYN="N">Zea mays</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Amino acid/auxin permease</Keyword><Keyword MajorTopicYN="Y">Conversed motif</Keyword><Keyword MajorTopicYN="Y">Expression patterns</Keyword><Keyword MajorTopicYN="Y">Moso bamboo</Keyword><Keyword MajorTopicYN="Y">Phylogenetic analysis</Keyword><Keyword MajorTopicYN="Y">qRT-PCR</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>06</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>01</Month><Day>19</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>2</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>2</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>9</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28143411</ArticleId><ArticleId IdType="doi">10.1186/s12870-017-0980-z</ArticleId><ArticleId IdType="pii">10.1186/s12870-017-0980-z</ArticleId><ArticleId IdType="pmc">PMC5282885</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Mol Genet Genomics. 2008 Dec;280(6):547-63</Citation><ArticleIdList><ArticleId IdType="pubmed">18813954</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1993 Jul 1;90(13):5944-8</Citation><ArticleIdList><ArticleId IdType="pubmed">8327465</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 1999 Apr;18(2):151-61</Citation><ArticleIdList><ArticleId IdType="pubmed">10363367</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2015 May 18;10(5):e0126657</Citation><ArticleIdList><ArticleId IdType="pubmed">25985202</ArticleId></ArticleIdList></Reference><Reference><Citation>J Plant Physiol. 2014 May 1;171(8):594-601</Citation><ArticleIdList><ArticleId IdType="pubmed">24709150</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Genet. 2013 Apr;45(4):456-61, 461e1-2</Citation><ArticleIdList><ArticleId IdType="pubmed">23435089</ArticleId></ArticleIdList></Reference><Reference><Citation>J Biol Chem. 2002 Nov 22;277(47):45338-46</Citation><ArticleIdList><ArticleId IdType="pubmed">12244056</ArticleId></ArticleIdList></Reference><Reference><Citation>Methods Mol Biol. 2009;537:337-50</Citation><ArticleIdList><ArticleId IdType="pubmed">19378153</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell Rep. 2011 Nov;30(11):2045-57</Citation><ArticleIdList><ArticleId IdType="pubmed">21713530</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 1996 Aug 16;273(5277):948-50</Citation><ArticleIdList><ArticleId IdType="pubmed">8688077</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2001 Apr;125(4):1813-20</Citation><ArticleIdList><ArticleId IdType="pubmed">11299361</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2010 Jun 18;10:116</Citation><ArticleIdList><ArticleId IdType="pubmed">20565830</ArticleId></ArticleIdList></Reference><Reference><Citation>Biochim Biophys Acta. 1999 Jan 8;1415(2):306-22</Citation><ArticleIdList><ArticleId IdType="pubmed">9889387</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 1997 Nov;115(3):1127-34</Citation><ArticleIdList><ArticleId IdType="pubmed">9390441</ArticleId></ArticleIdList></Reference><Reference><Citation>J Membr Biol. 1998 Apr 1;162(3):177-90</Citation><ArticleIdList><ArticleId IdType="pubmed">9543490</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2006 May;141(1):196-207</Citation><ArticleIdList><ArticleId IdType="pubmed">16581873</ArticleId></ArticleIdList></Reference><Reference><Citation>EMBO J. 1999 Apr 15;18(8):2066-73</Citation><ArticleIdList><ArticleId IdType="pubmed">10205161</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Rev Genet. 2010 Jan;11(1):31-46</Citation><ArticleIdList><ArticleId IdType="pubmed">19997069</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Biochem Sci. 2002 Mar;27(3):139-47</Citation><ArticleIdList><ArticleId IdType="pubmed">11893511</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2012;7(11):e49210</Citation><ArticleIdList><ArticleId IdType="pubmed">23166615</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell Physiol. 2015 Jul;56(7):1355-63</Citation><ArticleIdList><ArticleId IdType="pubmed">25907566</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant. 2011 May;4(3):453-63</Citation><ArticleIdList><ArticleId IdType="pubmed">21324969</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2008 Jan;36(Database issue):D281-8</Citation><ArticleIdList><ArticleId IdType="pubmed">18039703</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioessays. 1993 May;15(5):323-32</Citation><ArticleIdList><ArticleId IdType="pubmed">8102052</ArticleId></ArticleIdList></Reference><Reference><Citation>Planta. 2007 Sep;226(4):805-13</Citation><ArticleIdList><ArticleId IdType="pubmed">17476526</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2005 Jul;43(1):153-63</Citation><ArticleIdList><ArticleId IdType="pubmed">15960624</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2006 Jan 1;34(Database issue):D247-51</Citation><ArticleIdList><ArticleId IdType="pubmed">16381856</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2012;7(8):e42411</Citation><ArticleIdList><ArticleId IdType="pubmed">22900018</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1997 Dec 15;25(24):4876-82</Citation><ArticleIdList><ArticleId IdType="pubmed">9396791</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 1997 Oct 23;389(6653):870-6</Citation><ArticleIdList><ArticleId IdType="pubmed">9349821</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2003 Jan 2;421(6918):63-6</Citation><ArticleIdList><ArticleId IdType="pubmed">12511954</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Commun. 2014 Sep 11;5:4847</Citation><ArticleIdList><ArticleId IdType="pubmed">25209128</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2010 May 20;10:92</Citation><ArticleIdList><ArticleId IdType="pubmed">20487558</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Methods. 2008 Jan;5(1):16-8</Citation><ArticleIdList><ArticleId IdType="pubmed">18165802</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2009 Jun 1;25(11):1451-2</Citation><ArticleIdList><ArticleId IdType="pubmed">19346325</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2005 Jan;137(1):117-26</Citation><ArticleIdList><ArticleId IdType="pubmed">15618414</ArticleId></ArticleIdList></Reference><Reference><Citation>J Exp Bot. 2011 Oct;62(14):4731-48</Citation><ArticleIdList><ArticleId IdType="pubmed">21737415</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Plant Biol. 2012 Jun;15(3):315-21</Citation><ArticleIdList><ArticleId IdType="pubmed">22366488</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2011;6(5):e20596</Citation><ArticleIdList><ArticleId IdType="pubmed">21655229</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell Physiol. 2001 Nov;42(11):1282-9</Citation><ArticleIdList><ArticleId IdType="pubmed">11726714</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2013;8(2):e56573</Citation><ArticleIdList><ArticleId IdType="pubmed">23437174</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2004 May;16(5):1220-34</Citation><ArticleIdList><ArticleId IdType="pubmed">15105442</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant J. 2009 Aug;59(4):540-52</Citation><ArticleIdList><ArticleId IdType="pubmed">19392706</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2004 Jun 01;4:10</Citation><ArticleIdList><ArticleId IdType="pubmed">15171794</ArticleId></ArticleIdList></Reference><Reference><Citation>Nat Protoc. 2012 Mar 01;7(3):562-78</Citation><ArticleIdList><ArticleId IdType="pubmed">22383036</ArticleId></ArticleIdList></Reference><Reference><Citation>J Biol Chem. 1997 Nov 28;272(48):30552-7</Citation><ArticleIdList><ArticleId IdType="pubmed">9374550</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Genet Genomics. 2012 Apr;287(4):295-11</Citation><ArticleIdList><ArticleId IdType="pubmed">22314799</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2004 Dec;16(12):3285-303</Citation><ArticleIdList><ArticleId IdType="pubmed">15539469</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Genet. 2007 Feb 9;3(2):e11</Citation><ArticleIdList><ArticleId IdType="pubmed">17291162</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Physiol. 2000 Feb;122(2):319-26</Citation><ArticleIdList><ArticleId IdType="pubmed">10677425</ArticleId></ArticleIdList></Reference><Reference><Citation>J Biol Chem. 1995 Jul 7;270(27):16315-20</Citation><ArticleIdList><ArticleId IdType="pubmed">7608199</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1994 Nov 11;22(22):4673-80</Citation><ArticleIdList><ArticleId IdType="pubmed">7984417</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1993 Aug 15;90(16):7441-5</Citation><ArticleIdList><ArticleId IdType="pubmed">8356039</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Rep. 2016 Apr 20;6:24520</Citation><ArticleIdList><ArticleId IdType="pubmed">27094318</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 1999 Jan 1;27(1):297-300</Citation><ArticleIdList><ArticleId IdType="pubmed">9847208</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2004 Jan 1;32(Database issue):D142-4</Citation><ArticleIdList><ArticleId IdType="pubmed">14681379</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2003 Mar 27;422(6930):433-8</Citation><ArticleIdList><ArticleId IdType="pubmed">12660784</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2014 Jun 10;9(6):e98910</Citation><ArticleIdList><ArticleId IdType="pubmed">24915141</ArticleId></ArticleIdList></Reference><Reference><Citation>J Exp Bot. 2004 Oct;55(406):2155-68</Citation><ArticleIdList><ArticleId IdType="pubmed">15361541</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Liu, Huanlong" sort="Liu, Huanlong" uniqKey="Liu H" first="Huanlong" last="Liu">Huanlong Liu</name></noRegion><name sortKey="Liu, Huanlong" sort="Liu, Huanlong" uniqKey="Liu H" first="Huanlong" last="Liu">Huanlong Liu</name><name sortKey="Pan, Feng" sort="Pan, Feng" uniqKey="Pan F" first="Feng" last="Pan">Feng Pan</name><name sortKey="Wang, Yue" sort="Wang, Yue" uniqKey="Wang Y" first="Yue" last="Wang">Yue Wang</name><name sortKey="Wang, Yujiao" sort="Wang, Yujiao" uniqKey="Wang Y" first="Yujiao" last="Wang">Yujiao Wang</name><name sortKey="Wu, Min" sort="Wu, Min" uniqKey="Wu M" first="Min" last="Wu">Min Wu</name><name sortKey="Wu, Min" sort="Wu, Min" uniqKey="Wu M" first="Min" last="Wu">Min Wu</name><name sortKey="Xiang, Yan" sort="Xiang, Yan" uniqKey="Xiang Y" first="Yan" last="Xiang">Yan Xiang</name><name sortKey="Xiang, Yan" sort="Xiang, Yan" uniqKey="Xiang Y" first="Yan" last="Xiang">Yan Xiang</name><name sortKey="Xiang, Yan" sort="Xiang, Yan" uniqKey="Xiang Y" first="Yan" last="Xiang">Yan Xiang</name><name sortKey="Zhu, Dongyue" sort="Zhu, Dongyue" uniqKey="Zhu D" first="Dongyue" last="Zhu">Dongyue Zhu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001371 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001371 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:28143411
|texte= Genome-Wide analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis).
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:28143411" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |